Basic Information
Locus ID:
gene-LOC132633197
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 142806074 | 142817061 | - | gene-LOC132633197 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 45,795.12 Da | 53.23 | 66.09 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 285 | 313 | 2.4E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 325 | 353 | 2.4E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 277 | 312 | 9.58E-8 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 324 | 354 | 4.32E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 275 | 315 | 2.6E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 320 | 354 | 2.8E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 355 | 388 | 2.4E-7 | - |
| SMART | SM00547 | zf_4 | 287 | 311 | 4.0E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 360 | 384 | 0.58 | IPR001876 |
| SMART | SM00547 | zf_4 | 327 | 351 | 7.1E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 285 | 314 | 10.127614 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 358 | 387 | 9.077439 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 325 | 354 | 10.534134 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 329 | 348 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 362 | 381 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 274 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_015069634.1 | zinc finger protein VAR3, chloroplastic [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2BZ03 | Zinc finger protein VAR3, chloroplastic OS=Solanum chilense OX=4083 GN=EJD97_002339 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology