Basic Information
Locus ID:
gene-LOC132633066
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
TPL
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 140970816 | 140980235 | + | gene-LOC132633066 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 124,796.65 Da | 41.21 | 80.21 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 456 | 490 | 3.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 917 | 950 | 0.0047 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 829 | 1095 | 1.01E-37 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 350 | 665 | 7.78E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 317 | 542 | 1.0E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 969 | 1101 | 4.4E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 735 | 968 | 3.1E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 543 | 704 | 1.3E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1000 | 1041 | 9.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 537 | 580 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 443 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 828 | 865 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 868 | 908 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 382 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 534 | 0.021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 626 | 667 | 120.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.2E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 911 | 950 | 8.8E-6 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 583 | 623 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 490 | 5.2E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 601 | 632 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.131989 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 918 | 950 | 9.810144 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 918 | 950 | 11.744925 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 456 | 499 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 477 | 491 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1100 | 1132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1132 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_049367856.1 | protein TOPLESS-like [Solanum verrucosum] | 0 |
| Q94AI7 | Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1 | 0 | |
| TrEMBL | K4BLN8 | TOPLESS OS=Solanum lycopersicum OX=4081 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology