Basic Information
Locus ID:
gene-LOC132633030
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
CAF1 family ribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 140394548 | 140396046 | + | gene-LOC132633030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.75 | 31,019.99 Da | 34.35 | 90.22 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 159 | 243 | 7.2E-6 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 15 | 136 | 3.4E-11 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 12 | 265 | 5.8E-92 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 269 | 1.4E-101 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_049395870.1 | probable CCR4-associated factor 1 homolog 7 [Solanum stenotomum] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3Q7FRQ8 | poly(A)-specific ribonuclease OS=Solanum lycopersicum OX=4081 GN=101244756 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology