Basic Information
Locus ID:
gene-LOC132633000
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 139971433 | 139980779 | - | gene-LOC132633000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 124,375.02 Da | 38.51 | 82.91 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 922 | 955 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 492 | 0.003 | IPR001680 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 896 | 1120 | 2.28E-15 | IPR011048 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 443 | 960 | 2.43E-41 | IPR011047 |
| SUPERFAMILY | SSF101898 | NHL repeat | 354 | 471 | 2.62E-9 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 314 | 516 | 5.1E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 743 | 980 | 7.6E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 981 | 1102 | 1.2E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 517 | 683 | 1.9E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 7.8 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 2.0E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 873 | 913 | 2.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 492 | 4.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 536 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 582 | 110.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.0E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1007 | 1046 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 916 | 955 | 2.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 833 | 870 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 445 | 0.95 | IPR001680 |
| SMART | SM00320 | WD40_4 | 585 | 625 | 18.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.369186 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.639113 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 923 | 964 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 923 | 957 | 9.915599 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 501 | 10.909469 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 479 | 493 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1102 | 1133 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_049395817.1 | topless-related protein 4 isoform X1 [Solanum stenotomum] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3Q7FRL5 | Topless-related protein 4-like OS=Solanum lycopersicum OX=4081 GN=101250003 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology