Basic Information
Locus ID:
gene-LOC132632958
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 139484881 | 139488342 | + | gene-LOC132632958 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 37,399.11 Da | 43.33 | 69.16 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 93 | 328 | 1.71418E-108 | - |
| CDD | cd00035 | ChtBD1 | 32 | 69 | 1.67469E-13 | - |
| Pfam | PF00187 | Chitin recognition protein | 32 | 69 | 4.1E-13 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 92 | 328 | 3.4E-117 | IPR000726 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 32 | 81 | 1.44E-12 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 89 | 335 | 2.05E-97 | IPR023346 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 175 | 237 | 3.2E-108 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 96 | 334 | 3.2E-108 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 30 | 71 | 2.2E-16 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 32 | 70 | 1.0E-13 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 3 | 335 | 8.2E-112 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 30 | 72 | 9.627815 | IPR001002 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 42 | 61 | - | IPR018371 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 241 | 251 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 40 | 48 | 4.8E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 48 | 55 | 4.8E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 55 | 62 | 4.8E-5 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_019244745.1 | PREDICTED: endochitinase 3-like [Nicotiana attenuata] | 0 |
| P08252 | Endochitinase A OS=Nicotiana tabacum OX=4097 GN=CHN48 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1J6IL42 | Endochitinase 3 OS=Nicotiana attenuata OX=49451 GN=CHN14_1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology