Basic Information
Locus ID:
gene-LOC132632922
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 138425281 | 138427419 | + | gene-LOC132632922 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 48,035.57 Da | 34.42 | 97.30 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 318 | 342 | 0.46 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 127 | 175 | 4.2E-11 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 203 | 227 | 0.0088 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 283 | 308 | 1.1 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 233 | 260 | 3.7E-4 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 181 | 268 | 5.7E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 40 | 180 | 7.5E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 269 | 421 | 2.6E-20 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 130 | 163 | 1.6E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 128 | 162 | 11.180584 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 199 | 233 | 8.856788 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74400.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_015159491.1 | PREDICTED: putative pentatricopeptide repeat-containing protein At1g74400 [Solanum tuberosum] | 0 |
| Q9CA73 | Putative pentatricopeptide repeat-containing protein At1g74400 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E68 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3Q7FR45 | Pentatricopeptide repeat-containing protein OS=Solanum lycopersicum OX=4081 GN=101260810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13806 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000813 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114330 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004662 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54733, Sgl60034 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0021740 |
| Apiaceae | Apium graveolens | 1 | Ag4G00372 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G002100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714846 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G10467 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G74400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018864m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g29560.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g047950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1743 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1920 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g05480 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2665, evm.TU.LG14.1799 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g11930 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632922 |
| Solanaceae | Solanum chilense | 1 | SOLCI000669400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012932 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10188 |
| Zosteraceae | Zostera marina | 1 | Zosma06g09680.v3.1 |