Basic Information
Locus ID:
gene-LOC132632684
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 133844717 | 133853689 | + | gene-LOC132632684 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 143,878.02 Da | 45.73 | 86.78 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 32 | 163 | 4.6098E-17 | - |
| CDD | cd12108 | Hr-like | 608 | 748 | 5.57753E-10 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1146 | 1189 | 2.03029E-21 | - |
| Pfam | PF14599 | Zinc-ribbon | 1194 | 1251 | 1.7E-24 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 1016 | 1093 | 1.8E-16 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 35 | 164 | 1.4E-6 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1146 | 1188 | 5.2E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1145 | 1202 | 2.23E-7 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1084 | 1138 | 5.75E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1008 | 1074 | 3.14E-6 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 605 | 769 | 3.9E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 279 | 427 | 1.5E-6 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 28 | 182 | 9.6E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1140 | 1191 | 1.2E-9 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1218 | 1253 | 7.2E-16 | - |
| SMART | SM00184 | ring_2 | 1147 | 1188 | 2.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1147 | 1189 | 11.51558 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1009 | 1080 | 22.634592 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1083 | 1146 | 27.82494 | IPR017921 |
| Coils | Coil | Coil | 289 | 309 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74770.1 | zinc ion binding. | 0 |
| RefSeq | XP_015161090.1 | PREDICTED: uncharacterized protein LOC102592459 [Solanum tuberosum] | 0 |
| F4HVS0 | Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1g74770 PE=2 SV=1 | 0 | |
| TrEMBL | M1B0F8 | Zinc finger protein OS=Solanum tuberosum OX=4113 GN=102592459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology