Basic Information
Locus ID:
gene-LOC132632390
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 15699616 | 15701426 | - | gene-LOC132632390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 39,342.33 Da | 54.22 | 62.75 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 116 | 349 | 5.19456E-116 | - |
| CDD | cd00035 | ChtBD1 | 32 | 70 | 2.31508E-14 | - |
| Pfam | PF00187 | Chitin recognition protein | 32 | 70 | 2.4E-12 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 115 | 349 | 1.4E-125 | IPR000726 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 112 | 355 | 5.62E-103 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 32 | 81 | 3.93E-12 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 198 | 258 | 2.6E-115 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 120 | 355 | 2.6E-115 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 30 | 72 | 1.2E-15 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 32 | 70 | 4.6E-14 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 3 | 356 | 5.6E-120 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 30 | 72 | 10.294117 | IPR001002 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 133 | 155 | - | IPR000726 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 262 | 272 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 42 | 61 | - | IPR018371 |
| PRINTS | PR00451 | Chitin-binding domain signature | 40 | 48 | 6.8E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 48 | 55 | 6.8E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 55 | 62 | 6.8E-5 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_009786482.1 | PREDICTED: endochitinase 3-like [Nicotiana sylvestris] | 0 |
| P08252 | Endochitinase A OS=Nicotiana tabacum OX=4097 GN=CHN48 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1U7X2W4 | endochitinase 3-like OS=Nicotiana sylvestris OX=4096 GN=LOC104234584 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology