Basic Information
Locus ID:
gene-LOC132632251
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 124480445 | 124482867 | + | gene-LOC132632251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.44 | 17,904.83 Da | 35.92 | 83.79 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 90 | 152 | 2.35173E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 88 | 151 | 1.1E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 14 | 75 | 2.3E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 5 | 153 | 1.0E-45 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 82 | 157 | 3.4E-25 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 80 | 1.0E-22 | - |
| SMART | SM00054 | efh_1 | 14 | 42 | 6.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 126 | 154 | 1.2E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 90 | 118 | 4.3E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 50 | 78 | 0.011 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 46 | 81 | 11.249643 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 122 | 157 | 14.736568 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 10 | 45 | 14.90394 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 86 | 121 | 15.545536 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 99 | 111 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 59 | 71 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 135 | 147 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 23 | 35 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_009766127.1 | PREDICTED: probable calcium-binding protein CML18 [Nicotiana sylvestris] | 0 |
| Q9M8U1 | Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S4CTK3 | probable calcium-binding protein CML18 OS=Nicotiana tabacum OX=4097 GN=LOC107822318 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology