Basic Information
Locus ID:
gene-LOC132632087
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
A domain family that is part of the cupin metalloenzyme superfamily.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 120655990 | 120668019 | - | gene-LOC132632087 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 186,139.02 Da | 45.07 | 71.93 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02208 | cupin_RmlC-like | 1531 | 1579 | 4.07328E-4 | - |
| Pfam | PF02373 | JmjC domain, hydroxylase | 1493 | 1590 | 6.5E-16 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1189 | 1621 | 2.33E-36 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1181 | 1616 | 3.8E-156 | - |
| SMART | SM00384 | AT_hook_2 | 702 | 714 | 6.2 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 814 | 826 | 50.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 659 | 671 | 9.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 527 | 539 | 99.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 193 | 205 | 0.73 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 277 | 288 | 100.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 264 | 276 | 12.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 339 | 349 | 89.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 776 | 790 | 420.0 | IPR017956 |
| SMART | SM00558 | cupin_9 | 1291 | 1607 | 7.3E-71 | IPR003347 |
| SMART | SM00384 | AT_hook_2 | 36 | 48 | 6.4 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 77 | 89 | 72.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 458 | 470 | 43.0 | IPR017956 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 869 | 914 | 8.594486 | IPR001841 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1310 | 1607 | 24.879597 | IPR003347 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 737 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 699 | 714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 477 | - | - |
| Coils | Coil | Coil | 1673 | 1676 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00990.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_049393481.1 | uncharacterized protein LOC125857874 isoform X2 [Solanum stenotomum] | 0 |
| Q8VYB9 | Lysine-specific demethylase JMJ27 OS=Arabidopsis thaliana OX=3702 GN=JMJ27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0V0J078 | Putative lysine-specific demethylase JMJ25-like OS=Solanum chacoense OX=4108 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology