Basic Information
Locus ID:
gene-LOC132632061
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 119666067 | 119673804 | - | gene-LOC132632061 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.30 | 41,633.93 Da | 55.90 | 89.05 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 318 | 360 | 1.62418E-14 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 29 | 95 | 1.3E-17 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 317 | 360 | 2.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 311 | 363 | 2.99E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 283 | 365 | 1.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 318 | 359 | 1.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 318 | 360 | 12.769585 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006350635.1 | PREDICTED: RING-H2 finger protein ATL22-like [Solanum tuberosum] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | M1AIJ7 | Ring finger protein OS=Solanum tuberosum OX=4113 GN=102603520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology