Basic Information
Locus ID:
gene-LOC132631989
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 117805659 | 117814847 | - | gene-LOC132631989 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 92,077.39 Da | 41.21 | 87.39 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 549 | 682 | 2.79068E-24 | - |
| Pfam | PF17862 | AAA+ lid domain | 703 | 745 | 4.5E-12 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 551 | 681 | 3.5E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 511 | 747 | 5.31E-58 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 683 | 753 | 1.4E-95 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 510 | 682 | 1.4E-95 | IPR027417 |
| SMART | SM00382 | AAA_5 | 547 | 684 | 1.9E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 654 | 673 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 741 | 770 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 463 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_006366648.1 | PREDICTED: uncharacterized protein LOC102581738 [Solanum tuberosum] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | M1BRP5 | ATP binding protein OS=Solanum tuberosum OX=4113 GN=102581738 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology