Basic Information
Locus ID:
gene-LOC132631870
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Leucine-rich repeat receptor protein kinase exs
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 113569680 | 113574063 | + | gene-LOC132631870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 138,065.09 Da | 28.34 | 108.82 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 999 | 1268 | 2.77989E-103 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 63 | 3.2E-9 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 140 | 161 | 1.3 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 654 | 713 | 2.2E-8 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 996 | 1264 | 2.2E-44 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 824 | 846 | 0.43 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 339 | 590 | 1.93E-48 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 608 | 885 | 7.48E-59 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 974 | 1265 | 5.93E-79 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 51 | 331 | 1.73E-49 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 599 | 896 | 1.9E-85 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 181 | 1.5E-42 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 957 | 1068 | 2.9E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 471 | 598 | 9.0E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 275 | 369 | 1.5E-23 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 370 | 470 | 1.6E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 182 | 274 | 1.3E-26 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1069 | 1271 | 1.0E-60 | - |
| SMART | SM00369 | LRR_typ_2 | 568 | 592 | 55.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 89 | 113 | 23.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 652 | 676 | 26.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 161 | 185 | 32.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 186 | 210 | 40.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 258 | 282 | 42.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 652 | 673 | 490.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 137 | 163 | 440.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 186 | 215 | 540.0 | - |
| SMART | SM00369 | LRR_typ_2 | 748 | 771 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 520 | 544 | 27.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 89 | 112 | 190.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 748 | 774 | 190.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 822 | 848 | 210.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 258 | 287 | 48.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 724 | 739 | 490.0 | - |
| SMART | SM00369 | LRR_typ_2 | 137 | 160 | 67.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 993 | 1265 | 1.1E-34 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 822 | 846 | 14.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 993 | 1271 | 39.452953 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1115 | 1127 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 999 | 1022 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_004234442.1 | leucine-rich repeat receptor protein kinase EMS1 [Solanum lycopersicum] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BNH4 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_006230 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |