Basic Information
Locus ID:
gene-LOC132631864
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 113417897 | 113425368 | + | gene-LOC132631864 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 55,115.89 Da | 46.18 | 80.22 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 1.0E-16 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 215 | 266 | 1.0E-6 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 178 | 208 | 4.3E-5 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 314 | 375 | 3.85E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 274 | 9.22E-49 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 146 | 279 | 1.0E-22 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 302 | 381 | 7.0E-9 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 7 | 145 | 2.4E-30 | IPR036770 |
| SMART | SM00248 | ANK_2a | 220 | 252 | 7.9E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 146 | 6.6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.092 | IPR002110 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 2.7E-5 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 369 | 9.671455 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.416153 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 246 | 10.7663 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 11.62102 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 206 | 10.948734 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 246 | 10.736483 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.53241 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 334 | 343 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 481 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_016564679.2 | E3 ubiquitin-protein ligase XBAT33 [Capsicum annuum] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G3CW96 | Putative E3 ubiquitin-protein ligase XBOS33 OS=Capsicum chinense OX=80379 GN=BC332_08114 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology