Basic Information
Locus ID:
gene-LOC132631841
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 112514661 | 112519656 | + | gene-LOC132631841 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 27,101.96 Da | 71.71 | 59.79 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 191 | 230 | 1.1E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 191 | 230 | 4.5E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 236 | 1.7E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 192 | 230 | 0.0011 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 192 | 232 | 10.733671 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 86 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63530.1 | RING/U-box superfamily protein. Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size. Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation. | 0 |
| RefSeq | XP_049396142.1 | E3 ubiquitin-protein ligase BIG BROTHER-like isoform X1 [Solanum stenotomum] | 0 |
| Q8L649 | E3 ubiquitin-protein ligase BIG BROTHER OS=Arabidopsis thaliana OX=3702 GN=BB PE=1 SV=1 | 0 | |
| TrEMBL | M1B4V8 | Zinc finger, C3HC4 type family protein OS=Solanum tuberosum OX=4113 GN=102583422 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology