Basic Information
Locus ID:
gene-LOC132631818
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 111650331 | 111661417 | - | gene-LOC132631818 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 48,699.07 Da | 34.36 | 67.93 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 147 | 183 | 6.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 342 | 0.0032 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 303 | 7.7E-4 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 117 | 137 | 6.3E-6 | IPR041367 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 139 | 434 | 6.04E-44 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 114 | 138 | 7.59E-7 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 241 | 440 | 3.5E-32 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 27 | 137 | 2.0E-9 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 138 | 229 | 2.5E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 223 | 259 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 343 | 3.5E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 28 | 53 | 0.28 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 115 | 139 | 1.8E-5 | IPR000571 |
| SMART | SM00320 | WD40_4 | 144 | 183 | 3.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 266 | 303 | 2.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 393 | 430 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 390 | 3.1 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 151 | 192 | 14.05078 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 151 | 183 | 11.207411 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 113 | 140 | 14.548975 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 273 | 312 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 273 | 306 | 9.968326 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 10.004651 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 290 | 304 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 170 | 184 | 7.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 330 | 344 | 7.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 290 | 304 | 7.4E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 75 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_016564720.2 | zinc finger CCCH domain-containing protein 48 [Capsicum annuum] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G2ZYU6 | Zinc finger CCCH domain-containing protein 63 OS=Capsicum annuum OX=4072 GN=T459_09253 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology