Basic Information
Locus ID:
gene-LOC132631808
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
MADS-box protein SOC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 110710512 | 110732986 | - | gene-LOC132631808 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 29,227.60 Da | 62.21 | 83.89 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 33 | 101 | 2.69369E-44 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 40 | 87 | 5.7E-28 | IPR002100 |
| Pfam | PF01486 | K-box region | 117 | 203 | 2.1E-23 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 33 | 106 | 5.1E-34 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 43 | 130 | 5.5E-31 | IPR036879 |
| SMART | SM00432 | madsneu2 | 31 | 90 | 1.2E-42 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 119 | 209 | 14.276567 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 31 | 91 | 32.828354 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 33 | 87 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 68 | 89 | 1.0E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 53 | 68 | 1.0E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 33 | 53 | 1.0E-31 | IPR002100 |
| Coils | Coil | Coil | 119 | 139 | - | - |
| Coils | Coil | Coil | 153 | 202 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62165.1 | AGAMOUS-like 42. Encodes a MADS box transcription factor. Expressed in quiescent center. | 0 |
| RefSeq | XP_049397070.1 | MADS-box protein AGL42-like [Solanum stenotomum] | 0 |
| Q9FIS1 | MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8G7P9 | MADS-box protein AGL42-like isoform X1 OS=Capsicum annuum OX=4072 GN=LOC107863358 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology