Basic Information
Locus ID:
gene-LOC132631635
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 94797121 | 94814456 | - | gene-LOC132631635 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 105,920.53 Da | 47.91 | 83.71 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 765 | 918 | 5.91762E-58 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 313 | 917 | 2.9E-87 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 32 | 138 | 8.2E-23 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 10 | 138 | 9.94E-26 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 311 | 920 | 1.26E-109 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 300 | 525 | 9.9E-68 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 2 | 150 | 1.3E-35 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 151 | 236 | 1.3E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 708 | 928 | 6.1E-57 | - |
| SMART | SM00695 | dusp | 28 | 140 | 1.2E-32 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 313 | 920 | 56.997944 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 9 | 137 | 17.115358 | IPR006615 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 862 | 879 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 314 | 329 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 298 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_006344353.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 [Solanum tuberosum] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0V0IXE4 | Ubiquitin carboxyl-terminal hydrolase OS=Solanum chacoense OX=4108 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology