Basic Information
Locus ID:
gene-LOC132631546
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 148219788 | 148221659 | + | gene-LOC132631546 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 27,619.05 Da | 65.15 | 73.11 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 123 | 168 | 5.7E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 118 | 184 | 1.2E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 201 | 2.7E-15 | IPR013083 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 119 | 244 | 11.747043 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 123 | 171 | 9.89275 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 141 | 150 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_009783511.1 | PREDICTED: protein ariadne-1-like [Nicotiana sylvestris] | 0 |
| TrEMBL | A0A1U7X1H4 | protein ariadne-1-like OS=Nicotiana sylvestris OX=4096 GN=LOC104232111 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631546 |
| Solanaceae | Solanum chilense | 1 | SOLCI006550100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114075312 |