Basic Information
Locus ID:
gene-LOC132631233
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 122278659 | 122282971 | - | gene-LOC132631233 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 119,710.36 Da | 32.80 | 100.82 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 582 | 627 | 1.4E-6 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 801 | 1067 | 7.9E-42 | IPR000719 |
| Pfam | PF13516 | Leucine Rich repeat | 386 | 401 | 1.9 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 172 | 408 | 2.59E-43 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 782 | 1073 | 1.05E-66 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 33 | 241 | 2.15E-34 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 378 | 701 | 5.1E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 10 | 167 | 4.4E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 410 | 726 | 4.1E-86 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 168 | 409 | 1.2E-65 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 768 | 871 | 1.7E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 872 | 1080 | 1.5E-54 | - |
| SMART | SM00369 | LRR_typ_2 | 531 | 555 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 289 | 312 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 652 | 676 | 390.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 99 | 122 | 330.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 361 | 384 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 385 | 409 | 13.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 74 | 98 | 340.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 799 | 1077 | 3.0E-32 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 411 | 435 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 218 | 242 | 4.6 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 799 | 1072 | 35.73571 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 917 | 929 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 805 | 829 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 652 | 665 | 7.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 558 | 571 | 7.1E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73080.1 | PEP1 receptor 1. Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks. | 0 |
| RefSeq | XP_006347498.1 | PREDICTED: receptor-like protein kinase [Solanum tuberosum] | 0 |
| P93194 | Receptor-like protein kinase OS=Ipomoea nil OX=35883 GN=INRPK1 PE=2 SV=2 | 0 | |
| TrEMBL | M0ZUE9 | Leucine Rich Repeat family protein OS=Solanum tuberosum OX=4113 GN=102583295 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2137 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30166990 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G009110 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711259, gene-LOC120108963 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1110.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g19500 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1251 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011074, Pov_00034559 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2526, AH01.2527, BH01.2855, BH01.2857, CH01.3064 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0120090, gene-QOZ80_2AG0120110 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0108800.1, HORVU.MOREX.r3.5HG0480440.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005384, gene-QYE76_045167, gene-QYE76_045217 |
| Poaceae | Oryza coarctata | 2 | Oco20G001010, Oco20G001020 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g06740.1, LOC_Os10g06760.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G254700, gene-BS78_01G254800 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0301897, Pt_Chr0301916, Pt_Chr0301917, Pt_Chr0701996 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr15G016710 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G197400, Tel5E01G350100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG010300, gene_TRIDC5AG034110 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G090100.1.cds1, TraesCS2B02G105800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb026550_P001, Zm00001eb034800_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42998 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13073 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g08480 |
| Salicaceae | Populus euphratica | 1 | populus_peu29401 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132631233, gene-LOC132632151, gene-LOC132632152 |
| Solanaceae | Solanum chilense | 2 | SOLCI004878800, SOLCI004878900 |
| Zosteraceae | Zostera marina | 1 | Zosma01g26240.v3.1 |