Basic Information
Locus ID:
gene-LOC132630873
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
PDC3
Description:
Pyruvate decarboxylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 27990844 | 27995174 | + | gene-LOC132630873 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 65,383.92 Da | 28.34 | 89.62 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 405 | 587 | 5.33792E-88 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 46 | 205 | 1.40154E-89 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 43 | 209 | 7.5E-34 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 450 | 574 | 3.9E-14 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 240 | 357 | 2.7E-21 | IPR012000 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 407 | 599 | 7.19E-41 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 229 | 383 | 1.12E-33 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 43 | 222 | 8.0E-43 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 40 | 215 | 9.4E-60 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 230 | 392 | 2.6E-42 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 400 | 586 | 7.8E-56 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 38 | 599 | 1.3E-207 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_009628441.1 | pyruvate decarboxylase 1 [Nicotiana tomentosiformis] | 0 |
| Q9FFT4 | Pyruvate decarboxylase 2 OS=Arabidopsis thaliana OX=3702 GN=PDC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S3ZSC9 | pyruvate decarboxylase OS=Nicotiana tabacum OX=4097 GN=LOC107789890 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology