Basic Information
Locus ID:
gene-LOC132630800
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
CPK13
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 24646008 | 24655736 | + | gene-LOC132630800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 60,185.93 Da | 39.66 | 84.81 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 56 | 314 | 3.45594E-132 | - |
| Pfam | PF13499 | EF-hand domain pair | 362 | 420 | 2.2E-9 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 59 | 315 | 2.9E-72 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 432 | 495 | 1.2E-14 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 34 | 338 | 3.24E-84 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 352 | 508 | 1.36E-42 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 58 | 142 | 5.4E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 356 | 423 | 1.4E-51 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 333 | 494 | 1.4E-51 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 143 | 324 | 1.1E-60 | - |
| SMART | SM00220 | serkin_6 | 57 | 315 | 3.4E-93 | IPR000719 |
| SMART | SM00054 | efh_1 | 362 | 390 | 3.3E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 433 | 461 | 2.0E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 397 | 425 | 0.13 | IPR002048 |
| SMART | SM00054 | efh_1 | 469 | 497 | 1.2E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 429 | 464 | 14.820255 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 358 | 393 | 13.955498 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 57 | 315 | 46.534088 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 465 | 500 | 14.039183 | IPR002048 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 63 | 86 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 177 | 189 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 371 | 383 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 442 | 454 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 478 | 490 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 33 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_004246755.1 | calcium-dependent protein kinase 13 [Solanum lycopersicum] | 0 |
| Q8W4I7 | Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana OX=3702 GN=CPK13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3Q7IRV7 | Calcium-dependent protein kinase 13 OS=Solanum lycopersicum OX=4081 GN=101249955 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology