Basic Information
Locus ID:
gene-LOC132630746
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 22466439 | 22477722 | - | gene-LOC132630746 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 91,840.29 Da | 51.64 | 80.45 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 697 | 756 | 1.09173E-10 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 714 | 756 | 3.9E-7 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 146 | 368 | 9.6E-9 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 695 | 757 | 1.47E-13 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 133 | 396 | 2.89E-21 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 693 | 762 | 4.9E-10 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 133 | 397 | 3.3E-27 | IPR023214 |
| SMART | SM00577 | forpap2 | 198 | 374 | 1.6E-12 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 693 | 757 | 2.1E-9 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 139 | 387 | 16.839127 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 692 | 758 | 13.567616 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 571 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_016480800.1 | PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Nicotiana tabacum] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A1S4AW28 | protein-serine/threonine phosphatase OS=Nicotiana tabacum OX=4097 GN=LOC107801902 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology