Basic Information
Locus ID:
gene-LOC132630690
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 20271914 | 20280926 | + | gene-LOC132630690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 100,301.63 Da | 44.25 | 84.37 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 106 | 142 | 4.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 512 | 554 | 0.28 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 375 | 423 | 0.098 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 697 | 727 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 151 | 185 | 0.01 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 68 | 523 | 1.6E-36 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 410 | 729 | 8.24E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 461 | 604 | 4.7E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 611 | 798 | 2.9E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 229 | 455 | 2.2E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 29 | 222 | 4.1E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 145 | 185 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 463 | 500 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 607 | 643 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 294 | 390.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 558 | 597 | 0.0056 | IPR001680 |
| SMART | SM00320 | WD40_4 | 688 | 727 | 5.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 367 | 423 | 9.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 327 | 361 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 503 | 554 | 0.0048 | IPR001680 |
| SMART | SM00320 | WD40_4 | 57 | 98 | 62.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 101 | 142 | 7.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 646 | 685 | 35.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 695 | 728 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 695 | 728 | 8.966513 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09080.4 | - | 0 |
| RefSeq | XP_049375244.1 | uncharacterized protein LOC125840328 isoform X1 [Solanum verrucosum] | 0 |
| Q3U3T8 | WD repeat-containing protein 62 OS=Mus musculus OX=10090 GN=Wdr62 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3Q7I0Q4 | WD_REPEATS_REGION domain-containing protein OS=Solanum lycopersicum OX=4081 GN=101244223 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14799 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285450 |
| Apiaceae | Apium graveolens | 1 | Ag5G02363 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G25194 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G09080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022253m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07530.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g058390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1051 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1076, Cgl08G1077 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1010s00004.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1069 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006461 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09988 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1767 |
| Salicaceae | Populus euphratica | 1 | populus_peu11401 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630690 |
| Solanaceae | Solanum chilense | 1 | SOLCI000172200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029641 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4371 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1795 |