Basic Information
Locus ID:
gene-LOC132630617
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 18006498 | 18011167 | - | gene-LOC132630617 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 24,177.43 Da | 44.50 | 74.25 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 101 | 154 | 7.16832E-11 | - |
| Pfam | PF12906 | RING-variant domain | 101 | 153 | 1.4E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 97 | 156 | 2.47E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 89 | 162 | 3.1E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 100 | 154 | 3.9E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 93 | 160 | 16.561129 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_015086425.1 | uncharacterized protein LOC107029512 [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2BMJ1 | RING-CH-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_011040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology