Basic Information
Locus ID:
gene-LOC132630486
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 6036181 | 6038488 | + | gene-LOC132630486 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 19,316.34 Da | 44.39 | 65.70 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 15 | 67 | 6.4402E-23 | - |
| Pfam | PF13445 | RING-type zinc-finger | 17 | 49 | 5.3E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 15 | 78 | 4.64E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 79 | 1.8E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 17 | 65 | 7.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 17 | 66 | 11.176261 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 32 | 41 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28270.1 | RING membrane-anchor 2. Encodes a RING finger E3 ubiquitin ligase. Binds and ubiquitinates ABP1 in vivo and in vitro. | 0 |
| RefSeq | XP_009596932.1 | E3 ubiquitin-protein ligase RMA1H1-like [Nicotiana tomentosiformis] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S3XAF3 | RING-type E3 ubiquitin transferase OS=Nicotiana tabacum OX=4097 GN=LOC107762857 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology