Basic Information
Locus ID:
gene-LOC132630461
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 5935418 | 5940720 | + | gene-LOC132630461 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.59 | 26,480.08 Da | 51.67 | 73.13 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 41 | 93 | 5.24679E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 43 | 91 | 1.1E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 36 | 104 | 5.3E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 27 | 105 | 2.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 43 | 91 | 2.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 43 | 92 | 12.518784 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 58 | 67 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 153 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 0 |
| RefSeq | XP_016545677.1 | E3 ubiquitin-protein ligase RMA1H1-like [Capsicum annuum] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G3BCU0 | RING-type E3 ubiquitin transferase OS=Capsicum chinense OX=80379 GN=BC332_25095 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology