Basic Information
Locus ID:
gene-LOC132630307
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 10802547 | 10807363 | - | gene-LOC132630307 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 103,769.33 Da | 52.43 | 68.90 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 552 | 589 | 0.001 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 511 | 547 | 1.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 701 | 725 | 0.0072 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 400 | 432 | 3.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 395 | 911 | 1.39E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 381 | 495 | 2.8E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 503 | 755 | 5.0E-47 | IPR015943 |
| SMART | SM00320 | WD40_4 | 682 | 725 | 0.066 | IPR001680 |
| SMART | SM00320 | WD40_4 | 592 | 630 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 509 | 547 | 1.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 550 | 589 | 3.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 433 | 5.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 645 | 681 | 2.9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 556 | 590 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 704 | 725 | 9.104886 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 516 | 556 | 14.852817 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 556 | 590 | 10.07378 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 516 | 550 | 11.629227 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 401 | 435 | 11.049229 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 401 | 442 | 13.85027 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 420 | 434 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 534 | 548 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 534 | 548 | 3.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 576 | 590 | 3.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 420 | 434 | 3.9E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 820 | 834 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 774 | 880 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 839 | 880 | - | - |
| Coils | Coil | Coil | 809 | 829 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_009611531.1 | WD repeat-containing protein 44-like isoform X1 [Nicotiana tomentosiformis] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J6JX89 | Compass-like h3k4 histone methylase component wdr5a OS=Nicotiana attenuata OX=49451 GN=WDR5A_8 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology