Basic Information
Locus ID:
gene-LOC132630104
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase UPL4 isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 7549653 | 7560610 | - | gene-LOC132630104 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 170,921.55 Da | 46.19 | 89.84 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1141 | 1534 | 1.16105E-111 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1188 | 1536 | 1.3E-76 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 81 | 505 | 1.51E-35 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1139 | 1529 | 3.92E-90 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1420 | 1534 | 6.6E-33 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1092 | 1309 | 5.3E-39 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 86 | 531 | 1.3E-47 | IPR011989 |
| SMART | SM00119 | hect_3 | 1153 | 1536 | 5.3E-84 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1155 | 1536 | 59.575001 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 809 | 858 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 818 | 858 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 44 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_016542651.2 | E3 ubiquitin-protein ligase UPL4 isoform X1 [Capsicum annuum] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2G2YQF0 | HECT-type E3 ubiquitin transferase OS=Capsicum annuum OX=4072 GN=T459_22755 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology