Basic Information
Locus ID:
gene-LOC132630068
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6792080 | 6799446 | + | gene-LOC132630068 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 57,057.41 Da | 53.42 | 83.88 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 273 | 321 | 1.37664E-15 | - |
| Pfam | PF12906 | RING-variant domain | 273 | 320 | 3.3E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 269 | 324 | 3.84E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 259 | 328 | 5.0E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 272 | 321 | 2.9E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 265 | 327 | 19.230991 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 507 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 516 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_016468464.1 | PREDICTED: uncharacterized protein LOC107791000 [Nicotiana tabacum] | 0 |
| TrEMBL | A0A1S3ZVW4 | uncharacterized protein LOC107791000 OS=Nicotiana tabacum OX=4097 GN=LOC107791000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology