Basic Information
Locus ID:
gene-LOC132630050
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6233693 | 6236957 | - | gene-LOC132630050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 63,785.39 Da | 35.80 | 84.17 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 199 | 235 | 9.8E-7 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 297 | 455 | 3.27E-5 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 199 | 239 | 2.75E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 196 | 233 | 1.2E-6 | - |
| SMART | SM00256 | fbox_2 | 197 | 237 | 7.2E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 309 | 517 | 1.3E-25 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006341328.1 | PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum tuberosum] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | M1CDU2 | Class S F-box protein OS=Solanum tuberosum OX=4113 GN=102583476 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 7 | gene-LOC132601986, gene-LOC132601987, gene-LOC132603133 ... |
| Solanaceae | Solanum chilense | 6 | SOLCI000005900, SOLCI001662300, SOLCI001819600 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107001609, gene-LOC107010212, gene-LOC107025894 ... |