Basic Information
Locus ID:
gene-LOC132629980
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 4633421 | 4638219 | + | gene-LOC132629980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 31,167.50 Da | 68.46 | 51.57 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 193 | 251 | 6.3E-26 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 145 | 188 | 6.4E-8 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 10 | 91 | 3.9E-19 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 144 | 194 | 9.54E-10 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 5 | 81 | 1.44E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 82 | 139 | 3.27E-19 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 217 | 260 | 7.5E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 209 | 2.1E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 146 | 188 | 2.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 146 | 189 | 12.061441 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 3 | 79 | 24.919231 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 81 | 145 | 34.247086 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_016471960.1 | PREDICTED: E3 ubiquitin-protein ligase MIEL1-like isoform X1 [Nicotiana tabacum] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S4A5W6 | E3 ubiquitin-protein ligase MIEL1-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107794025 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology