Basic Information
Locus ID:
gene-LOC132629970
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 4323832 | 4336025 | + | gene-LOC132629970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 118,385.64 Da | 38.40 | 86.47 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 360 | 415 | 1.5E-12 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 639 | 687 | 2.2E-15 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 706 | 748 | 9.1E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 785 | 848 | 3.1E-8 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 693 | 748 | 4.94E-15 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 942 | 1038 | 2.34E-7 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 789 | 853 | 3.4E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 692 | 772 | 5.8E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 705 | 746 | 2.9E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 794 | 851 | 0.015 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 703 | 748 | 10.3622 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 706 | 745 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 515 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_006354396.1 | PREDICTED: uncharacterized protein LOC102585738 isoform X1 [Solanum tuberosum] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | M0ZX84 | DNA binding protein OS=Solanum tuberosum OX=4113 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology