Basic Information
Locus ID:
gene-LOC132629881
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
SHR-binding domain of vacuolar-sorting associated protein 13
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 1809023 | 1886152 | - | gene-LOC132629881 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 468,466.69 Da | 42.70 | 89.25 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2600 | 2704 | 1.1222E-4 | - |
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 2836 | 2962 | 1.3E-6 | IPR010482 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 4.7E-32 | IPR026854 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3217 | 3525 | 1.6E-10 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2207 | 2346 | 3.9E-10 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 383 | 2.1E-68 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1968 | 2111 | 3.0E-12 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 573 | 796 | 9.4E-32 | IPR031642 |
| SMART | SM00694 | dysfc | 2927 | 2967 | 0.0087 | IPR006614 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2945 | 2971 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_015161501.1 | PREDICTED: uncharacterized protein LOC102586877 [Solanum tuberosum] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7YYM5 | uncharacterized protein LOC104249147 OS=Nicotiana sylvestris OX=4096 GN=LOC104249147 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology