Basic Information
Locus ID:
gene-LOC132629397
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
E3 ubiquitin-protein ligase PUB23-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 21078730 | 21080505 | - | gene-LOC132629397 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 51,742.42 Da | 46.15 | 100.65 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 18 | 61 | 1.79412E-21 | - |
| Pfam | PF04564 | U-box domain | 14 | 85 | 6.9E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 104 | 439 | 6.05E-15 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 90 | 1.99E-30 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 92 | 3.9E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 103 | 451 | 9.2E-15 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 17 | 81 | 7.1E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 13 | 88 | 36.065685 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_049407618.1 | E3 ubiquitin-protein ligase PUB23-like [Solanum stenotomum] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | M1B6H0 | RING-type E3 ubiquitin transferase OS=Solanum tuberosum OX=4113 GN=102594408 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology