Basic Information
Locus ID:
gene-LOC132629299
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 8860059 | 8864903 | - | gene-LOC132629299 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 29,576.97 Da | 51.79 | 88.55 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 46 | 78 | 3.3E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 34 | 106 | 1.7E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 34 | 136 | 3.3E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 46 | 100 | 0.0083 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 46 | 101 | 10.143551 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 65 | 74 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018622294.1 | E3 ubiquitin-protein ligase RNF182-like [Nicotiana tomentosiformis] | 0 |
| TrEMBL | A0A1S3X339 | E3 ubiquitin-protein ligase RNF182-like OS=Nicotiana tabacum OX=4097 GN=LOC107760559 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology