Basic Information
Locus ID:
gene-LOC132629189
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 495059 | 497286 | - | gene-LOC132629189 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 63,508.61 Da | 47.35 | 65.65 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 196 | 256 | 8.1E-12 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 278 | 315 | 1.2E-5 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 515 | 539 | 1.18E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 275 | 323 | 5.83E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 118 | 203 | 8.39E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 196 | 263 | 2.34E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 228 | 2.1E-11 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 252 | 497 | 2.0E-68 | - |
| SMART | SM00647 | ibrneu5 | 265 | 318 | 0.054 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 194 | 256 | 1.7E-16 | IPR002867 |
| SMART | SM00547 | zf_4 | 518 | 542 | 0.0048 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 515 | 542 | 8.117602 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 119 | 326 | 40.009583 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 520 | 539 | - | IPR001876 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_049371021.1 | probable E3 ubiquitin-protein ligase ARI8 [Solanum verrucosum] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S3YIL5 | RBR-type E3 ubiquitin transferase OS=Nicotiana tabacum OX=4097 GN=LOC107776545 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629189 |
| Solanaceae | Solanum chilense | 1 | SOLCI005917200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016385 |