Basic Information
Locus ID:
gene-LOC132629060
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase At4g27290
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 142781631 | 142786579 | + | gene-LOC132629060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 25,233.83 Da | 38.49 | 92.09 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01098 | PAN_AP_plant | 1 | 54 | 6.65846E-17 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 88 | 150 | 3.6E-9 | IPR001245 |
| Pfam | PF08276 | PAN-like domain | 1 | 41 | 4.1E-13 | IPR003609 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 86 | 187 | 2.57E-20 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 64 | 142 | 5.1E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 143 | 220 | 1.1E-7 | - |
| Gene3D | G3DSA:3.50.4.10 | Hepatocyte Growth Factor | 1 | 52 | 4.3E-5 | - |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 1 | 57 | 8.115173 | IPR003609 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 39 | 220 | 8.951782 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27290.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_016514455.1 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Nicotiana tabacum] | 0 |
| O81832 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana OX=3702 GN=At4g27290 PE=3 SV=4 | 0 | |
| TrEMBL | A0A1U8GLG7 | Receptor-like serine/threonine-protein kinase OS=Capsicum annuum OX=4072 GN=LOC107867288 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1588 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023813 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl25444, Sgl25455 |
| Apiaceae | Apium graveolens | 1 | Ag8G01866 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629060 |