Basic Information
Locus ID:
gene-LOC132628983
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 136710662 | 136711198 | - | gene-LOC132628983 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.24 | 21,292.99 Da | 42.49 | 90.39 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 78 | 124 | 4.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 78 | 129 | 3.76E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 134 | 2.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 79 | 123 | 1.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 79 | 124 | 13.271187 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17450.1 | RING-H2 finger A3A. Encodes a putative RING-H2 finger protein RHA3a. | 0 |
| RefSeq | XP_016461551.1 | PREDICTED: RING-H2 finger protein ATL57-like [Nicotiana tabacum] | 0 |
| O22755 | Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A314L2A2 | E3 ubiquitin-protein ligase rha2a OS=Nicotiana attenuata OX=49451 GN=RHA2A_1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11433, jg22607, jg6095 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00024334, Pov_00024335 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132628965, gene-LOC132628972, gene-LOC132628983 |
| Solanaceae | Solanum chilense | 2 | SOLCI000858300, SOLCI002333900 |