Basic Information
Locus ID:
gene-LOC132628965
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 135714659 | 135715174 | + | gene-LOC132628965 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 19,807.13 Da | 42.15 | 92.34 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 80 | 124 | 7.9E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 80 | 130 | 1.54E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 77 | 128 | 1.0E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 81 | 124 | 10.571388 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20395.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_049390458.1 | uncharacterized protein LOC125854901 [Solanum stenotomum] | 0 |
| Q9M0R7 | RING-H2 finger protein ATL39 OS=Arabidopsis thaliana OX=3702 GN=ATL39 PE=2 SV=1 | 0 | |
| TrEMBL | M1CMY5 | RING-type domain-containing protein OS=Solanum tuberosum OX=4113 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11433, jg22607, jg6095 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00024334, Pov_00024335 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132628965, gene-LOC132628972, gene-LOC132628983 |
| Solanaceae | Solanum chilense | 2 | SOLCI000858300, SOLCI002333900 |