Basic Information
Locus ID:
gene-LOC132628836
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 122573068 | 122574147 | - | gene-LOC132628836 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.33 | 41,391.36 Da | 49.56 | 85.49 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 13 | 50 | 2.3E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 60 | 3.27E-12 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 99 | 336 | 1.11E-7 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 13 | 49 | 2.1E-7 | - |
| SMART | SM00256 | fbox_2 | 14 | 53 | 2.8E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 105 | 329 | 6.4E-18 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 53 | 11.325583 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47390.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_049361181.1 | F-box protein At5g49610-like [Solanum verrucosum] | 0 |
| Q9FX09 | Putative F-box protein At1g47390 OS=Arabidopsis thaliana OX=3702 GN=At1g47390 PE=4 SV=1 | 0 | |
| TrEMBL | M1B1K6 | F-box family protein OS=Solanum tuberosum OX=4113 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27685 |
| Solanaceae | Lycium barbarum | 7 | gene-LOC132611547, gene-LOC132611549, gene-LOC132611550 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI002051000, SOLCI002051100, SOLCI002060600 |