Basic Information
Locus ID:
gene-LOC132628827
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 120447835 | 120449507 | + | gene-LOC132628827 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 29,280.12 Da | 40.56 | 83.22 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 41 | 124 | 1.1E-16 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 38 | 136 | 5.36E-27 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 35 | 135 | 4.7E-24 | IPR036431 |
| SMART | SM00501 | bright_3 | 38 | 129 | 6.9E-23 | IPR001606 |
| SMART | SM01014 | ARID_2 | 34 | 124 | 3.7E-22 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 37 | 128 | 24.591213 | IPR001606 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_015086304.1 | high mobility group B protein 15-like [Solanum pennellii] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S3XEA0 | high mobility group B protein 15-like OS=Nicotiana tabacum OX=4097 GN=LOC107764183 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology