Basic Information
Locus ID:
gene-LOC132628771
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 115559218 | 115564164 | + | gene-LOC132628771 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 47,975.00 Da | 69.50 | 81.41 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 338 | 380 | 1.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 327 | 386 | 6.36E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 317 | 384 | 2.7E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 339 | 379 | 7.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 339 | 380 | 12.858103 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02750.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_033510661.1 | uncharacterized protein LOC117275499 [Nicotiana tomentosiformis] | 0 |
| Q8GXF8 | E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana OX=3702 GN=SGR9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A314L4F9 | Putative e3 ubiquitin-protein ligase rhb1a OS=Nicotiana attenuata OX=49451 GN=RHB1A_1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628771 |
| Solanaceae | Solanum chilense | 2 | SOLCI004618700, SOLCI004618800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031202 |