Basic Information
Locus ID:
gene-LOC132628132
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Receptor protein kinase CLAVATA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 151076404 | 151081188 | - | gene-LOC132628132 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 108,854.15 Da | 33.73 | 103.79 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 457 | 516 | 2.0E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 695 | 971 | 9.5E-45 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 243 | 264 | 0.58 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 68 | 9.2E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 529 | 588 | 8.3E-7 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 686 | 971 | 1.29E-73 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 246 | 592 | 1.33E-67 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 57 | 307 | 4.08E-45 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 142 | 227 | 1.1E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 228 | 326 | 3.8E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 141 | 9.9E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 330 | 628 | 7.1E-84 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 773 | 982 | 8.3E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 663 | 772 | 8.0E-22 | - |
| SMART | SM00220 | serkin_6 | 694 | 971 | 3.7E-29 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 432 | 456 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 167 | 190 | 350.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 479 | 503 | 76.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 264 | 288 | 82.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 551 | 575 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 336 | 360 | 31.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 694 | 972 | 38.265697 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 817 | 829 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75820.1 | Leucine-rich receptor-like protein kinase family protein. Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. | 0 |
| RefSeq | XP_019228776.1 | PREDICTED: receptor protein kinase CLAVATA1 [Nicotiana attenuata] | 0 |
| Q8GRU6 | Leucine-rich repeat receptor-like kinase protein HAR1 OS=Lotus japonicus OX=34305 GN=HAR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0V0IX03 | Putative receptor protein kinase CLAVATA1-like OS=Solanum chacoense OX=4108 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology