Basic Information
Locus ID:
gene-LOC132627785
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 144192614 | 144194306 | - | gene-LOC132627785 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 30,612.14 Da | 58.59 | 101.46 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 20 | 65 | 4.9E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 112 | 254 | 1.08E-17 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 70 | 7.46E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 19 | 61 | 2.4E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 95 | 263 | 1.5E-22 | IPR032675 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019224972.1 | PREDICTED: F-box protein SKIP1-like [Nicotiana attenuata] | 0 |
| TrEMBL | A0A314KW51 | F-box domain-containing protein OS=Nicotiana attenuata OX=49451 GN=A4A49_10561 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg860, jg864 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g14640 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627785 |