Basic Information
Locus ID:
gene-LOC132627618
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 140433641 | 140444151 | + | gene-LOC132627618 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 128,867.40 Da | 58.70 | 62.87 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 121 | 158 | 1.9E-8 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 640 | 942 | 8.8E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 637 | 948 | 6.28E-84 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 118 | 163 | 3.31E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 632 | 954 | 3.0E-91 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 110 | 162 | 2.1E-11 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 640 | 945 | 50.589127 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 121 | 158 | 11.533531 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 121 | 158 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 641 | 656 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1056 | 1080 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 953 | 985 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1148 | 1180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 537 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1056 | 1079 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1148 | 1166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1021 | 1040 | - | - |
| Coils | Coil | Coil | 41 | 61 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_049349682.1 | ubiquitin carboxyl-terminal hydrolase 17 [Solanum verrucosum] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0V0J0B9 | Putative ubiquitin carboxyl-terminal hydrolase 17-like OS=Solanum chacoense OX=4108 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology