Basic Information
Locus ID:
gene-LOC132626983
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 122011824 | 122024167 | - | gene-LOC132626983 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 48,254.60 Da | 63.69 | 83.49 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 13 | 163 | 3.49574E-54 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 233 | 276 | 1.88037E-22 | - |
| Pfam | PF02225 | PA domain | 77 | 142 | 4.1E-11 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 233 | 276 | 2.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 217 | 286 | 2.2E-19 | - |
| SUPERFAMILY | SSF52025 | PA domain | 82 | 152 | 8.89E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 194 | 281 | 7.7E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 24 | 155 | 3.4E-27 | - |
| SMART | SM00184 | ring_2 | 234 | 275 | 2.6E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 234 | 276 | 12.371254 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 352 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_006361369.1 | PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Solanum tuberosum] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3Q7ITJ7 | RING-type domain-containing protein OS=Solanum lycopersicum OX=4081 GN=101248068 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology