Basic Information
Locus ID:
gene-LOC132626969
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Regulator of chromosome condensation (RCC1) repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 121277129 | 121279604 | + | gene-LOC132626969 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 85,283.79 Da | 42.56 | 85.75 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 482 | 763 | 1.07992E-90 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 479 | 761 | 4.2E-46 | IPR001245 |
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 228 | 254 | 1.7E-7 | - |
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 196 | 217 | 3.7E-5 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 454 | 762 | 1.86E-74 | IPR011009 |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 95 | 293 | 7.24E-19 | IPR009091 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 451 | 563 | 7.2E-31 | - |
| Gene3D | G3DSA:2.130.10.30 | - | 147 | 316 | 1.2E-18 | IPR009091 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 564 | 776 | 1.4E-52 | - |
| SMART | SM00220 | serkin_6 | 476 | 765 | 3.6E-34 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 476 | 765 | 37.95475 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 482 | 504 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 609 | 621 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 368 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47850.1 | CRINKLY4 related 4. | 0 |
| RefSeq | XP_004250410.1 | serine/threonine-protein kinase-like protein CCR4 [Solanum lycopersicum] | 0 |
| Q9FIJ6 | Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana OX=3702 GN=CCR4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3Q7ITE3 | Protein kinase domain-containing protein OS=Solanum lycopersicum OX=4081 GN=101250181 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology