Basic Information
Locus ID:
gene-LOC132626867
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 116333098 | 116340026 | - | gene-LOC132626867 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 46,364.34 Da | 57.86 | 85.69 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 216 | 263 | 1.42992E-14 | - |
| Pfam | PF12906 | RING-variant domain | 216 | 262 | 5.5E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 212 | 266 | 3.53E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 201 | 270 | 7.0E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 215 | 263 | 7.2E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 208 | 269 | 21.029202 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 71 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_016541930.1 | uncharacterized protein LOC107842538 isoform X1 [Capsicum annuum] | 0 |
| TrEMBL | A0A1U8EF33 | uncharacterized protein LOC107842538 isoform X1 OS=Capsicum annuum OX=4072 GN=LOC107842538 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology