Basic Information
Locus ID:
gene-LOC132626716
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 107066189 | 107077823 | + | gene-LOC132626716 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 85,556.96 Da | 45.08 | 74.44 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 120 | 221 | 2.28128E-14 | IPR000014 |
| CDD | cd13999 | STKc_MAP3K-like | 493 | 739 | 4.80696E-129 | - |
| Pfam | PF00989 | PAS fold | 112 | 221 | 3.9E-15 | IPR013767 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 487 | 739 | 4.6E-67 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 471 | 737 | 5.33E-84 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 107 | 218 | 1.15E-22 | IPR035965 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 120 | 227 | 7.7E-26 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 480 | 564 | 5.0E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 565 | 764 | 2.9E-62 | - |
| SMART | SM00091 | pas_2 | 111 | 177 | 4.7E-11 | IPR000014 |
| SMART | SM00220 | serkin_6 | 487 | 743 | 5.7E-58 | IPR000719 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 109 | 228 | 2.7E-20 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 487 | 743 | 43.113659 | IPR000719 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 109 | 180 | 17.603848 | IPR000014 |
| ProSiteProfiles | PS50113 | PAC domain profile. | 182 | 234 | 9.125537 | IPR000700 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 606 | 618 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 647 | 657 | 5.3E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 561 | 574 | 5.3E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 710 | 732 | 5.3E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 666 | 688 | 5.3E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 600 | 618 | 5.3E-11 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 96 | - | - |
| Coils | Coil | Coil | 12 | 46 | - | - |
| Coils | Coil | Coil | 736 | 756 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49470.3 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_049377468.1 | uncharacterized protein LOC125842248 [Solanum stenotomum] | 0 |
| Q9FPR3 | Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana OX=3702 GN=EDR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0V0IW57 | Putative serine/threonine-protein kinase-like OS=Solanum chacoense OX=4108 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology